Metagenomic testing as a means of identifying the pathogens causing Ear diseases
Type of Spiritual Experience
The interesting side issue relating to this entry is that use of immunosuppressants to suppress the symptoms such as tinnitis in what may have started as a mild infection, may in the end produce a chronic condition because of the disruption in the biome
A description of the experience
Infect Dis Poverty. 2016 Nov 1;5(1):97.
Middle ear microbiome differences in indigenous Filipinos with chronic otitis media due to a duplication in the A2ML1 gene.
Santos-Cortez RL1,2, Hutchinson DS3, Ajami NJ3, Reyes-Quintos MR4,5, Tantoco ML4, Labra PJ5, Lagrana SM4, Pedro M4, Llanes EG4,5, Gloria-Cruz TL4,5, Chan AL4,5, Cutiongco-de la Paz EM6,7, Belmont JW8,9, Chonmaitree T10, Abes GT4,5, Petrosino JF3, Leal SM11, Chiong CM4,5.
Previously rare A2ML1 variants were identified to confer otitis media susceptibility in an indigenous Filipino community and in otitis-prone US children. The goal of this study is to describe differences in the middle ear microbiome between carriers and non-carriers of an A2ML1 duplication variant that increases risk for chronic otitis media among indigenous Filipinos with poor health care access.
Ear swabs were obtained from 16 indigenous Filipino individuals with chronic otitis media, of whom 11 carry the A2ML1 duplication variant. Ear swabs were submitted for 16S rRNA gene sequencing.
Genotype-based differences in microbial richness, structure, and composition were identified, but were not statistically significant. Taxonomic analysis revealed that the relative abundance of the phyla Fusobacteria and Bacteroidetes, and genus Fusobacterium were nominally increased in carriers compared to non-carriers, but were non-significant after correction for multiple testing. We also detected rare bacteria including Oligella that was reported only once in the middle ear.
These findings suggest that A2ML1-related otitis media susceptibility may be mediated by changes in the middle ear microbiome. Knowledge of middle ear microbial profiles according to genetic background can be potentially useful for therapeutic and prophylactic interventions for otitis media and can guide public health interventions towards decreasing otitis media prevalence within the indigenous Filipino community.
A2ML1; Indigenous population; Microbiome; Middle ear; Oligella; Otitis media; Philippines
The source of the experiencePubMed
Concepts, symbols and science items
Science ItemsMetagenomic testing
Activities and commonsteps